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Protein Kinase A freeware
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Protein Kinase A

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Added: April 16, 2013 | Visits: 207

unfoldprotein.m UNFOLDPROTEIN(data, bracket) calculates the melting temperature, Tm, of a protein from a given Nx2 array of unfolding data (with N >= 10). In the case of unfolding studies performed using circular dichroism spectroscopy, the second Tm calculated using the maximum of the first derivative of the CD...



Platforms: Matlab

License: Freeware Size: 10 KB Download (18): unfoldprotein.m Download

Added: January 07, 2010 | Visits: 1.253

Bio::Tools::Run::PiseApplication::consensus Bio::Tools::Run::PiseApplication::consensus is a Perl module. Bioperl class for: CONSENSUS Identification of consensus patterns in unaligned DNA and protein sequences (Hertz, Stormo) References: G.Z. Hertz and G.D. Stormo. Identification of consensus patterns in unaligned DNA and protein...





Platforms: *nix

License: Freeware Size: 829.44 KB Download (76): Bio::Tools::Run::PiseApplication::consensus Download

Added: August 25, 2013 | Visits: 217

HOPPscore - Protein Structure Quality HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution structures. Features . Protein Structure Quality...


Platforms: *nix

License: Freeware Size: 2.29 MB Download (16): HOPPscore - Protein Structure Quality Download

Added: March 27, 2010 | Visits: 1.130

Bio::Tools::Run::TribeMCL Bio::Tools::Run::TribeMCL is a method for clustering proteins into related groups, which are termed protein families. SYNOPSIS use Bio::Tools::Run::TribeMCL; use Bio::SearchIO; # 3 methods to input the blast results # straight forward raw blast output (NCBI or WU-BLAST) my @params =...


Platforms: *nix

License: Freeware Size: 829.44 KB Download (168): Bio::Tools::Run::TribeMCL Download

Released: July 11, 2012  |  Added: July 11, 2012 | Visits: 274

ProtAnnot ProtAnnot is a small, Java based application is a protein annotation viewer that displays protein annotations in the context of the genomic sequence. This software is a making it easy to see how alternative mRNA structures affect the various protein products encoded at a locus. for WindowsAll


Platforms: Windows

License: Freeware Download (43): ProtAnnot Download

Released: June 03, 2012  |  Added: June 03, 2012 | Visits: 412

GPS The Genome Positioning System (GPS) is a software tool to study protein-DNA interaction using ChIP-Seq data. GPS builds a probabilistic mixture model to predict the most likely positions of binding events at single-base resolution. GPS is a Java software, so it runs on multiple platforms,...


Platforms: Windows

License: Freeware Download (45): GPS Download

Released: July 13, 2012  |  Added: July 13, 2012 | Visits: 358

TMRPres2D TMRPres2D or TransMembrane protein Re-Presentation in 2 Dimensions for long, is a small, easy to use application designed to automate the creation of uniform, two-dimensional, high analysis graphical images/models of alpha-helical or beta-barrel transmembrane proteins. Protein sequence data and...


Platforms: Windows

License: Freeware Download (49): TMRPres2D Download

Released: August 08, 2012  |  Added: August 08, 2012 | Visits: 358

CLC Main Workbench Main Workbench includes all features from CLC DNA Workbench, CLC RNA Workbench, and CLC Protein Workbench, as well as a range of Gene Expression Analysis. CLC Main Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with...


Platforms: Windows, XP, Windows Vista, XPX64, 7, 7x64

License: Freeware Download (47): CLC Main Workbench Download

Released: January 10, 2013  |  Added: January 10, 2013 | Visits: 322

Protein Skimmer Puzzle Fun Puzzle That Creates A Picture Of A Protein Skimmer


Platforms: Windows

License: Freeware Size: 293 KB Download (27): Protein Skimmer Puzzle Download

Released: July 03, 2012  |  Added: July 03, 2012 | Visits: 224

Whey Protein Review Desktop Alert This is a very easy to use desktop application that will alert you whenever new articles are added to Whey Protein Review.com. Simply install the software and any time new content is added to the website, you will receive an alert on your desktop letting you know, and showing you part of the...


Platforms: Windows

License: Freeware Size: 656 KB Download (27): Whey Protein Review Desktop Alert Download

Released: August 09, 2012  |  Added: August 09, 2012 | Visits: 309

GRaPe - Gene Reaction Protein Builder GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation.


Platforms: Windows, Mac, Linux

License: Freeware Size: 3.62 MB Download (27): GRaPe - Gene Reaction Protein Builder Download

Released: July 03, 2012  |  Added: July 03, 2012 | Visits: 269

Protein Geometry Database The Protein Geometry Database hosts the development code for a flexible database for searching protein geometry, as well as a library for accessing this data for protein modeling & refinement programs.


Platforms: Windows, Mac, Linux

License: Freeware Size: 96.13 KB Download (29): Protein Geometry Database Download

Added: April 24, 2013 | Visits: 273

MATLAB Contest Protein This contest concerns a very simplified two-dimensional version of the protein folding problem. Given the amino acid sequence of a simplified protein, your job is to determine a final "optimally folded" configuration. Each potential arrangement of the protein sequence is associated with an energy...


Platforms: Matlab

License: Freeware Size: 10 KB Download (20): MATLAB Contest Protein Download

Added: August 21, 2013 | Visits: 236

FSA For Linux FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.


Platforms: *nix

License: Freeware Size: 9.61 MB Download (21): FSA For Linux Download

Added: November 04, 2013 | Visits: 203

Cscape (Cancer Landscape) Cscape is an application for visualizing and navigating through data from a Reverse Phase Protein Microarray (RPMA). Cscape uses the Google Maps API to map the RPMA data on top of an image of a cancer cell and its associated pathways.


Platforms: *nix

License: Freeware Size: 1.25 MB Download (16): Cscape (Cancer Landscape) Download

Added: December 02, 2013 | Visits: 346

fast5 For Linux Fast5 is a probabilistic file format for the storage of nucleotide and protein sequences based on hdf5.


Platforms: *nix

License: Freeware Size: 40.96 KB Download (18): fast5 For Linux Download

Added: September 23, 2013 | Visits: 215

ProDy for Linux ProDy is a free and open-source Python package for analyzing protein structural dynamics. It allows for quantitative analysis of heterogeneous experimental structural datasets and comparison with theoretically predicted conformational dynamics. The input for ProDy is the atomic coordinates of...


Platforms: *nix

License: Freeware Size: 727.04 KB Download (18): ProDy for Linux Download

Released: October 19, 2014  |  Added: October 19, 2014 | Visits: 131

Protein Science A leading biochemistry journal is now available on your iPad. Fresh from the newsstand, Protein Science brings you a stimulating, high-impact mixture of Original Research and Review Articles, recent advances in methodology, Historical Reviews, Highlights, and more. Enjoy an entirely new browsing...


Platforms: iOS

License: Freeware Size: 5 MB Download (8): Protein Science Download

Added: August 12, 2006 | Visits: 5.412

Alert Post-A-Board Create and offer Web Message Boards. No Scripting, No HTML required. Just install the Post-A-Board server and run it alongside your current Web Server - or on its own. Control Panel-driven Web interface lets you create Public Boards and Private Boards. Alert Post-A-Board lets you create and/or...


Platforms: Windows

License: Freeware Size: 3.4 MB Download (329): Alert Post-A-Board Download

Released: January 07, 2003  |  Added: April 18, 2006 | Visits: 4.960

Math-A-Maze Find your way through a maze of numbers and mathematical operators by carving out equations whose sums equal the required values. Randomly generated mazes of different sizes for unending variety and all skill levels.


Platforms: Windows

License: Freeware Size: 142 KB Download (181): Math-A-Maze Download

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