Protein Kinase A
UNFOLDPROTEIN(data, bracket) calculates the melting temperature, Tm, of a protein from a given Nx2 array of unfolding data (with N >= 10). In the case of unfolding studies performed using circular dichroism spectroscopy, the second Tm calculated using the maximum of the first derivative of the CD...
|License: Freeware||Size: 10 KB||Download (18): unfoldprotein.m Download|
Bio::Tools::Run::PiseApplication::consensus is a Perl module. Bioperl class for: CONSENSUS Identification of consensus patterns in unaligned DNA and protein sequences (Hertz, Stormo) References: G.Z. Hertz and G.D. Stormo. Identification of consensus patterns in unaligned DNA and protein...
|License: Freeware||Size: 829.44 KB||Download (76): Bio::Tools::Run::PiseApplication::consensus Download|
HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution structures. Features . Protein Structure Quality...
|License: Freeware||Size: 2.29 MB||Download (16): HOPPscore - Protein Structure Quality Download|
Bio::Tools::Run::TribeMCL is a method for clustering proteins into related groups, which are termed protein families. SYNOPSIS use Bio::Tools::Run::TribeMCL; use Bio::SearchIO; # 3 methods to input the blast results # straight forward raw blast output (NCBI or WU-BLAST) my @params =...
|License: Freeware||Size: 829.44 KB||Download (168): Bio::Tools::Run::TribeMCL Download|
ProtAnnot is a small, Java based application is a protein annotation viewer that displays protein annotations in the context of the genomic sequence.
This software is a making it easy to see how alternative mRNA structures affect the various protein products encoded at a locus. for WindowsAll
|License: Freeware||Download (42): ProtAnnot Download|
The Genome Positioning System (GPS) is a software tool to study protein-DNA interaction using ChIP-Seq data. GPS builds a probabilistic mixture model to predict the most likely positions of binding events at single-base resolution.
GPS is a Java software, so it runs on multiple platforms,...
|License: Freeware||Download (43): GPS Download|
TMRPres2D or TransMembrane protein Re-Presentation in 2 Dimensions for long, is a small, easy to use application designed to automate the creation of uniform, two-dimensional, high analysis graphical images/models of alpha-helical or beta-barrel transmembrane proteins.
Protein sequence data and...
|License: Freeware||Download (47): TMRPres2D Download|
Main Workbench includes all features from CLC DNA Workbench, CLC RNA Workbench, and CLC Protein Workbench, as well as a range of Gene Expression Analysis.
CLC Main Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with...
Platforms: Windows, XP, Windows Vista, XPX64, 7, 7x64
|License: Freeware||Download (47): CLC Main Workbench Download|
|License: Freeware||Size: 293 KB||Download (27): Protein Skimmer Puzzle Download|
This is a very easy to use desktop application that will alert you whenever new articles are added to Whey Protein Review.com. Simply install the software and any time new content is added to the website, you will receive an alert on your desktop letting you know, and showing you part of the...
|License: Freeware||Size: 656 KB||Download (27): Whey Protein Review Desktop Alert Download|
GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation.
Platforms: Windows, Mac, Linux
|License: Freeware||Size: 3.62 MB||Download (27): GRaPe - Gene Reaction Protein Builder Download|
The Protein Geometry Database hosts the development code for a flexible database for searching protein geometry, as well as a library for accessing this data for protein modeling & refinement programs.
Platforms: Windows, Mac, Linux
|License: Freeware||Size: 96.13 KB||Download (29): Protein Geometry Database Download|
This contest concerns a very simplified two-dimensional version of the protein folding problem. Given the amino acid sequence of a simplified protein, your job is to determine a final "optimally folded" configuration. Each potential arrangement of the protein sequence is associated with an energy...
|License: Freeware||Size: 10 KB||Download (20): MATLAB Contest Protein Download|
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.
|License: Freeware||Size: 9.61 MB||Download (20): FSA For Linux Download|
Cscape is an application for visualizing and navigating through data from a Reverse Phase Protein Microarray (RPMA). Cscape uses the Google Maps API to map the RPMA data on top of an image of a cancer cell and its associated pathways.
|License: Freeware||Size: 1.25 MB||Download (16): Cscape (Cancer Landscape) Download|
Fast5 is a probabilistic file format for the storage of nucleotide and protein sequences based on hdf5.
|License: Freeware||Size: 40.96 KB||Download (18): fast5 For Linux Download|
ProDy is a free and open-source Python package for analyzing protein structural dynamics. It allows for quantitative analysis of heterogeneous experimental structural datasets and comparison with theoretically predicted conformational dynamics. The input for ProDy is the atomic coordinates of...
|License: Freeware||Size: 727.04 KB||Download (18): ProDy for Linux Download|
A leading biochemistry journal is now available on your iPad. Fresh from the newsstand, Protein Science brings you a stimulating, high-impact mixture of Original Research and Review Articles, recent advances in methodology, Historical Reviews, Highlights, and more. Enjoy an entirely new browsing...
|License: Freeware||Size: 5 MB||Download (8): Protein Science Download|
Create and offer Web Message Boards. No Scripting, No HTML required. Just install the Post-A-Board server and run it alongside your current Web Server - or on its own. Control Panel-driven Web interface lets you create Public Boards and Private Boards. Alert Post-A-Board lets you create and/or...
|License: Freeware||Size: 3.4 MB||Download (327): Alert Post-A-Board Download|
Find your way through a maze of numbers and mathematical operators by carving out equations whose sums equal the required values. Randomly generated mazes of different sizes for unending variety and all skill levels.
|License: Freeware||Size: 142 KB||Download (181): Math-A-Maze Download|